A1 Journal article (refereed)
Assessing the effectiveness of spatial PCA on SVM-based decoding of EEG data (2024)


Zhang, G., Carrasco, C. D., Winsler, K., Bahle, B., Cong, F., & Luck, S. J. (2024). Assessing the effectiveness of spatial PCA on SVM-based decoding of EEG data. Neuroimage, 293, Article 120625. https://doi.org/10.1016/j.neuroimage.2024.120625


JYU authors or editors


Publication details

All authors or editorsZhang, Guanghui; Carrasco, Carlos D.; Winsler, Kurt; Bahle, Brett; Cong, Fengyu; Luck, Steven J.

Journal or seriesNeuroimage

ISSN1053-8119

eISSN1095-9572

Publication year2024

Publication date03/05/2024

Volume293

Article number120625

PublisherElsevier

Publication countryUnited States

Publication languageEnglish

DOIhttps://doi.org/10.1016/j.neuroimage.2024.120625

Research data linkhttps://doi.org/10.18115/D5JW4R

Publication open accessOpenly available

Publication channel open accessOpen Access channel

Publication is parallel published (JYX)https://jyx.jyu.fi/handle/123456789/94848

Additional informationAdditional data and scripts are available at https://osf.io/tgzew/


Abstract

Principal component analysis (PCA) has been widely employed for dimensionality reduction prior to multivariate pattern classification (decoding) in EEG research. The goal of the present study was to provide an evaluation of the effectiveness of PCA on decoding accuracy (using support vector machines) across a broad range of experimental paradigms. We evaluated several different PCA variations, including group-based and subject-based component decomposition and the application of Varimax rotation or no rotation. We also varied the numbers of PCs that were retained for the decoding analysis. We evaluated the resulting decoding accuracy for seven common event-related potential components (N170, mismatch negativity, N2pc, P3b, N400, lateralized readiness potential, and error-related negativity). We also examined more challenging decoding tasks, including decoding of face identity, facial expression, stimulus location, and stimulus orientation. The datasets also varied in the number and density of electrode sites. Our findings indicated that none of the PCA approaches consistently improved decoding performance related to no PCA, and the application of PCA frequently reduced decoding performance. Researchers should therefore be cautious about using PCA prior to decoding EEG data from similar experimental paradigms, populations, and recording setups.


KeywordsEEGsignal analysissignal processingprincipal component analysismachine learning

Free keywordsEEG; MVPA; group-based PCA; subject-based PCA; dimensionality reduction


Contributing organizations


Ministry reportingYes

Reporting Year2024

Preliminary JUFO rating3


Last updated on 2024-03-07 at 20:07