Assessment of microalgae species, biomass and distribution from spectral images using a convolution neural network


Salmi, Pauliina; Calderini, Marco; Taipale, Sami; Pölönen, Ilkka; Pääkkönen, Salli. (2021). Assessment of microalgae species, biomass and distribution from spectral images using a convolution neural network. V. 2.9.2021. University of Jyväskylä. https://doi.org/10.17011/jyx/dataset/78519.


JYU authors
  • Contact person (yes/no)Yes
  • Contact person (yes/no)No
  • Contact person (yes/no)No
  • Contact person (yes/no)No
  • Contact person (yes/no)

All authorsSalmi, Pauliina; Calderini, Marco; Taipale, Sami; Pölönen, Ilkka; Pääkkönen, Salli

FundersResearch Council of Finland

Right-holders


Availability and identifiers

AvailabilityDirect download

Publication year2021

URN identifier in original repositoryhttp://urn.fi/URN:NBN:fi:jyu-202111085543

DOI identifier in original repositoryhttps://doi.org/10.17011/jyx/dataset/78519

URN identifier in JYXhttp://urn.fi/URN:NBN:fi:jyu-202111085543

DOI identifier in JYXhttps://doi.org/10.17011/jyx/dataset/78519


Description of the dataset

DescriptionThe data and code related to the article "Assessment of microalgae species, biomass and distribution from spectral images using a convolution neural network" consist of the following parts:

1. Spectral transmittance images of algal samples on 24-well plates
2. Biomass assessments by an electronic cell counter
3. Training and validation data for a convolution neural network
4. Test data for a convolution neural network
5. Python code for training and validation and test data processing
6. Python code for running three replicates of seven different topologies of a convolution neural network and the models themselves

LanguageEnglish

Free keywordsspectral imaging; microalgae monitoring; machine learning

Keywords (YSO)microalgaespectral imagingmachine learning

Fields of science1183 Plant biology, microbiology, virology113 Computer and information sciences

Do you deal with data concerning special categories of personal data in your research?No


Projects related to dataset


Publications and other outputs related to dataset


Last updated on 2023-11-05 at 14:21