Assessment of microalgae species, biomass and distribution from spectral images using a convolution neural network


Salmi, Pauliina; Calderini, Marco; Taipale, Sami; Pölönen, Ilkka; Pääkkönen, Salli. (2021). Assessment of microalgae species, biomass and distribution from spectral images using a convolution neural network. V. 2.9.2021. University of Jyväskylä. https://doi.org/10.17011/jyx/dataset/78519.


JYU authors: 
  • Contact person (yes/no): Yes
  • Contact person (yes/no): No
  • Contact person (yes/no): No
  • Contact person (yes/no): No
  • Contact person (yes/no): 

All authors: Salmi, Pauliina; Calderini, Marco; Taipale, Sami; Pölönen, Ilkka; Pääkkönen, Salli

Funders: Research Council of Finland

Right-holders: 


Availability and identifiers

Availability: Direct download

Publication year: 2021

URN identifier in original repository: http://urn.fi/URN:NBN:fi:jyu-202111085543

DOI identifier in original repository: https://doi.org/10.17011/jyx/dataset/78519

URN identifier in JYX: http://urn.fi/URN:NBN:fi:jyu-202111085543

DOI identifier in JYX: https://doi.org/10.17011/jyx/dataset/78519


Description of the dataset

Description: The data and code related to the article "Assessment of microalgae species, biomass and distribution from spectral images using a convolution neural network" consist of the following parts:

1. Spectral transmittance images of algal samples on 24-well plates
2. Biomass assessments by an electronic cell counter
3. Training and validation data for a convolution neural network
4. Test data for a convolution neural network
5. Python code for training and validation and test data processing
6. Python code for running three replicates of seven different topologies of a convolution neural network and the models themselves

Language: English

Free keywords: spectral imaging; microalgae monitoring; machine learning

Keywords (YSO): microalgae; spectral imaging; machine learning

Fields of science: 1183 Plant biology, microbiology, virology; 113 Computer and information sciences

Follow-up groups: Aquatic Sciences (Department of Biological and Environmental Science BIOENV) WET; School of Resource Wisdom (University of Jyväskylä JYU) JYU.Wisdom; Computational Science (Faculty of Information Technology IT) LASK

Do you deal with data concerning special categories of personal data in your research?: No


Projects related to dataset


Publications and other outputs related to dataset


Last updated on 2024-04-04 at 14:22