Publications (4957)

A1 Journal article (refereed)

1H, 13C, and 15N NMR chemical shift assignment of the complex formed by the first EPEC EspF repeat and N-WASP GTPase binding domain (2021)

Biomolecular NMR Assignments, Early online, http://doi.org/10.1007/s12104-021-10008-9, OA

Karjalainen, Mikael; Hellman, Maarit; Tossavainen, Helena; Permi, Perttu

A1 Journal article (refereed)

1H, 13C and 15N NMR chemical shift assignments of A. thaliana RCD1 RST (2017)

Biomolecular NMR Assignments, 11 (2), 207-210, http://doi.org/10.1007/s12104-017-9749-4

Tossavainen, Helena; Hellman, Maarit; Vainonen, Julia P.; Kangasjärvi, Jaakko; Permi, Perttu

A1 Journal article (refereed)

1H, 13C and 15N NMR chemical shift assignments of cAMP-regulated phosphoprotein-19 and -16 (ARPP-19 and ARPP-16) (2020)

Biomolecular NMR Assignments, 14 (2), 227-231, http://doi.org/10.1007/s12104-020-09951-w, OA

Thapa, Chandan J.; Haataja, Tatu; Pentikäinen, Ulla; Permi, Perttu

A1 Journal article (refereed)

1H, 13C and 15N resonance assignments of the new lysostaphin family endopeptidase catalytic domain from Staphylococcus aureus (2017)

Biomolecular NMR Assignments, 11 (1), 69-73, http://doi.org/10.1007/s12104-016-9722-7

Raulinaitis, Vytas; Tossavainen, Helena; Aitio, Olli; Seppälä, Raili; Permi, Perttu

A1 Journal article (refereed)

2D-IR Study of a Photoswitchable Isotope-Labeled a-Helix (2010)

Journal of Physical Chemistry, 114 (10), 3735-3740, http://doi.org/10.1021/jp911849n

Backus, Ellen H.G.; Bloem, Robert; Donaldson, Paul M .; Ihalainen, Janne; Pfister, Rolf; Paoli, Beatrice; Caflisch, Amedeo; Hamm, Peter

A1 Journal article (refereed)

2NH and 3OH are crucial structural requirements in sphingomyelin for sticholysin II binding and pore formation in bilayer membranes (2013)

Biochimica et Biophysica Acta: Biomembranes, 1828 (5), 1390-95, http://doi.org/10.1016/j.bbamem.2013.01.018

Maula, Terhi; Isaksson, Y. Jenny E.; García-Linares, Sara; Pentikäinen, Olli; Niinivehmas, Sanna; Kurita, Mayuko; Yamaguchi, Shou; Yamamoto, Tetsuya; Katsumura, Shigeo; Gavilanes, José G.; et al.

A1 Journal article (refereed)

6-O sulfated and N-sulfated Syndecan-1 promotes baculovirus binding and entry into mammalian cells. (2013)

Journal of Virology, 87 (20), 11148-11159, http://doi.org/10.1128/JVI.01919-13, OA

Makkonen, Emilia; Turkki, Paula; Laakkonen, Johanna; YläHerttuala, Seppo; Marjomäki, Varpu; Airenne, Kari

A1 Journal article (refereed)

A 2000-year record of lake ontogeny and climate variability from the north-eastern European Russian Arctic (2017)

Holocene, 27 (3), 339-348, http://doi.org/10.1177/0959683616660168

Luoto, Tomi; Kuhry, Peter; Holzkämper, Steffen; Solovieva, Nadia; Self, Angela E.

A1 Journal article (refereed)

A 5500-year oxygen isotope record of high arctic environmental change from southern Spitsbergen (2017)

Holocene, 27 (12), 1948-1962, http://doi.org/10.1177/0959683617715698

Arppe, Laura; Kurki, Eija; Wooller, Matthew J.; Luoto, Tomi; Zajączkowski, Marek; Ojala, Antti

A1 Journal article (refereed)

Abandoning the ship using sex, dispersal or dormancy : multiple escape routes from challenging conditions (2018)

Philosophical Transactions of the Royal Society B: Biological Sciences, 373 (1757), 0424, http://doi.org/10.1098/rstb.2017.0424

Gerber, Nina; Kokko, Hanna

A1 Journal article (refereed)

A bark beetle infestation predictive model based on satellite data in the frame of decision support system TANABBO (2020)

iForest - Biogeosciences and Forestry, 13 (3), 215-223, http://doi.org/10.3832/ifor3271-013, OA

Duriaciova, R.; Munko, M.; Barka, I.; Koren, M.; Resnerova, K.; Holusa, J.; Blazenec, M,; Potterf, M.; Jakus, R.

A1 Journal article (refereed)

A Bioenergetics Model for Zander: Construction, Validation, and Evaluation of Uncertainty Caused by Multiple Input Parameters (2008)

Transactions of the American Fisheries Society, 137, 1741–1755, http://doi.org/10.1577/t07-113.1

Keskinen, Tapio; Jääskeläinen, Juha; Marjomäki, Timo; Matilainen, Tero; Karjalainen, Juha

A1 Journal article (refereed)

Abiotic and biotic controls on methane formation down to 2.5 km depth within the Precambrian Fennoscandian Shield (2017)

Geochimica et Cosmochimica Acta, 202 (0), 124-145, http://doi.org/10.1016/j.gca.2016.12.020, OA

Kietäväinen, Riikka; Ahonen, Lasse; Niinikoski, Paula; Nykänen, Hannu; Kukkonen, Ilmo T.

B1 Non-refereed journal articles

Absence of integrin alfa1beta1 in the mouse causes loss of feedback regulation of collagen synthesis in normal and wounded dermis (1999)

Journal of Cell Science, 112, 263-272,

Heino, Jyrki; Gardner, H; Pozzi, A; Broberg, A; Laato, M

A1 Journal article (refereed)

Absence of Sex Differential Plasticity to Light Availability during Seed Maturation in Geranium sylvaticum (2015)

PLoS ONE, 10 (3), e0118981, http://doi.org/10.1371/journal.pone.0118981, OA

Varga, Sandra; Laaksonen, Ester; Siikamäki, Pirkko; Kytöviita, Minna-Maarit

A1 Journal article (refereed)

Abundance and δ13C values of fatty acids in lacustrine surface sediments : Relationships with in-lake methane concentrations (2018)

Quaternary Science Reviews, 191 (0), 337-347, http://doi.org/10.1016/j.quascirev.2018.04.029, OA

Stötter, Tabea; Bastviken, David; Bodelier, Paul L.E.; van Hardenbroek, Maarten; Rinta, Päivi; Schilder, Johannes; Schubert, Carsten J.; Heiri, Oliver

A1 Journal article (refereed)

Abundant and diverse arsenic‐metabolizing microorganisms in peatlands treating arsenic‐contaminated mining wastewaters (2020)

Environmental Microbiology, 22 (4), 1572-1587, http://doi.org/10.1111/1462-2920.14922, OA

Kujala, Katharina; Besold, Johannes; Mikkonen, Anu; Tiirola, Marja; Planer-Friedrich, Britta

A1 Journal article (refereed)

Acanthocephalan size and sex affect the modification of intermediate host colouration (2009)

Parasitology, 136, 847-854, http://doi.org/10.1017/S0031182009006180

Benesh, Daniel P.; Seppälä, Otto; Valtonen, Tellervo

A1 Journal article (refereed)

A case study of the coconut crab Birgus latro on Zanzibar highlights global threats and conservation solutions (2020)

Oryx, First View, http://doi.org/10.1017/s0030605319000863

Caro, Tim; Hamad, Haji; Rashid, Rashid Suleiman; Kloiber, Ulrike; Morgan, Victoria M.; Nokelainen, Ossi; Caro, Barnabas; Pretelli, Ilaria; Cumberlidge, Neil; Borgerhoff Mulder, Monique

B3 Non-refereed conference proceedings

A Case Study on Bionergy Utilisation and Potential in Costa Rica (2005)

Proceedings in Seventh Finnish Conference of Environmental Sciences, 128-131,

Huttunen, Suvi; Lampinen, Ari

A1 Journal article (refereed)

Acclimation capacity and rate change through life in the zooplankton Daphnia (2020)

Proceedings of the Royal Society B : Biological Sciences, 287 (1924), 20200189, http://doi.org/10.1098/rspb.2020.0189, OA

Burton, Tim; Lakka, Hanna-Kaisa; Einum, Sigurd

A1 Journal article (refereed)

Accounting for littoral primary production by periphyton shifts a highly humic boreal lake towards net autotrophy (2016)

Freshwater Biology, 61 (3), 265–276, http://doi.org/10.1111/fwb.12700, OA

Vesterinen, Jussi; Devlin, Shawn; Syväranta, Jari; Jones, Roger

A1 Journal article (refereed)

Accumulation of low-oxygen water in deep waters of ice-covered lakes cooled below 4 °C (2013)

Inland Waters, 3 (1), 15-24, http://doi.org/10.5268/IW-3.1.514

Pulkkanen, Merja; Salonen, Kalevi

G4 Doctoral dissertation (monograph)

Accumulation of organochlorines in Baltic Sea fishes. - Organoklooriyhdisteiden kertyminen Itämeren kaloihin. (2007)

Kiljunen, Mikko

A1 Journal article (refereed)

Accumulation of plasma proteins in Purkinje cells as an indicator of blood-brain barrier breakdown (2004)

Forensic Science International, 146, 121-4,

Ikegaya, H; Heino, Jyrki; Laaksonen, H; Toivonen, S; Kalimo, H; Saukko, P

A1 Journal article (refereed)

Accumulation of plerocercoids of Triaenophorus crassus in the second intermediate host Coregonus lavaretus and their effect on growth of the host (1999)

J. Fish. Biol., 55 (nro), 115-126,

Pulkkinen, Katja; Valtonen, Tellervo

A1 Journal article (refereed)

Accurate Three States Model for Amino Acids with Two Chemically Coupled Titrating Sites in Explicit Solvent Atomistic Constant pH Simulations and pKa Calculations (2017)

Journal of Chemical Theory and Computation, 13 (1), 147-160, http://doi.org/10.1021/acs.jctc.6b00807

Dobrev, Plamen; Donnini, Serena; Groenhof, Gerrit; Grubmüller, Helmut

A1 Journal article (refereed)

A century-long genetic record reveals that protist effective population sizes are comparable to those of macroscopic species (2013)

Biology Letters, 9 (0), http://doi.org/10.1098/rsbl.2013.0849

Watts, Phillip; Lundholm, Nina; Ribeiro, Sofia; Ellegaard, Marianne

A1 Journal article (refereed)

Acid–Base Properties and Surface Charge Distribution of the Water-Soluble Au102(pMBA)44 Nanocluster (2016)

Journal of Physical Chemistry C, 120 (18), 10041-10050, http://doi.org/10.1021/acs.jpcc.6b00922

Koivisto, Jaakko; Chen, Xi; Donnini, Serena; Lahtinen, Tanja; Häkkinen, Hannu; Groenhof, Gerrit; Pettersson, Mika

A1 Journal article (refereed)

Acidobacteria dominate the active bacterial communities of Arctic tundra with widely divergent winter-time snow accumulation and soil temperatures (2013)

FEMS Microbiology Ecology, 82 (1), 47-59, http://doi.org/10.1111/1574-6941.12035

Männistö, Minna; Kurhela, Emilia; Tiirola, Marja; Häggblom, Max

B2 Book section

Acid preservation of poultry by-products (2003)

Biojätteiden paineistettu anaerobinen biokonversio, Jyväskylän yliopiston Biologian laitoksen tiedonantoja, 79, 140-157,

Goryntseva, Marina

B1 Non-refereed journal articles

A Common Receptor Found for Echoviruses (2019)

Trends in Microbiology, 27 (6), 475-477, http://doi.org/10.1016/j.tim.2019.03.010

Laajala, Mira; Marjomäki, Varpu

A1 Journal article (refereed)

A comparative study of the effect of UV and formalin inactivation on the stability and immunogenicity of a Coxsackievirus B1 vaccine (2019)

Vaccine, 37 (40), 5962-5971, http://doi.org/10.1016/j.vaccine.2019.08.037, OA

Hankaniemi, Minna M.; Stone, Virginia M.; Sioofy-Khojine, Amir-Babak; Heinimäki, Suvi; Marjomäki, Varpu; Hyöty, Heikki; Blazevic, Vesna; Laitinen, Olli H.; Flodström-Tullberg, Malin; Hytönen, Vesa P.

G5 Doctoral dissertation (article)

A comparison of the impacts of introduced signal crayfish and native noble crayfish in boreal lake ecosystems (2014)

Jyväskylä studies in biological and environmental science, 293, OA

Ercoli, Fabio

A1 Journal article (refereed)

A comparison of three statistical methods for analysing extinction threat status (2014)

Environmental Conservation, 41 (1), 37-44, http://doi.org/10.1017/S0376892913000246

Taft, Heather R.; Roff, Derek A.; Komonen, Atte; Kotiaho, Janne Sakari

A1 Journal article (refereed)

A comparison of two methods for surveying aquatic macrophyte communities in boreal lakes: Implications for bioassessment (2013)

Aquatic Botany, 104 (1), 88-100, http://doi.org/10.1016/j.aquabot.2012.09.002

Kanninen, Antti; Vallinkoski, Veli-Matti; Leka, Jarkko; Marjomäki, Timo; Hellsten, Seppo; Hämäläinen, Heikki

A1 Journal article (refereed)

A cost of maternal care in the dung beetle Onthophagus taurus (2002)

Journal of Evolutionary Biology, 15, 57-64,

Hunt, J.; Simmons, L.W.; Kotiaho, Janne Sakari

A1 Journal article (refereed)

Acoustic signalling in a wolf spider: can signal characteristics predict male quality? (2000)

Animal Behaviour, 60 (2), 187-194,

Mappes, Johanna; Kotiaho, Janne Sakari; Alatalo, Rauno Veli; Rivero, Ana

A1 Journal article (refereed)

Activation of the immune defence of the freshwater snail Lymnaea stagnalis by different immune elicitors (2013)

Journal of Experimental Biology, 216 (15), 2902-2907, http://doi.org/10.1242/jeb.084947

Seppälä, Otto; Leicht, Katja

A1 Journal article (refereed)

Active hiding of social information from information-parasites (2014)

BMC Evolutionary Biology, 14 (32), http://doi.org/10.1186/1471-2148-14-32, OA

Loukola, Olli J.; Laaksonen, Toni; Seppänen, Janne-Tuomas; Forsman, Jukka T.

A1 Journal article (refereed)

Activity and role of the enchytraeid worm Cognettia sphagnetorum (Vejd.) (Oligochaeta: Enchytraeidae) in organic and mineral forest soil (2003)

Pedobiologia, 47 (-), 303-310,

Haimi, Jari; Siira-Pietikäinen, Anne

A1 Journal article (refereed)

Acute and chronic response to a change in salinity of the euryhaline polychaete Pygospio elegans (Claparède) (2019)

Journal of Experimental Marine Biology and Ecology, 516 (0), 79-88, http://doi.org/10.1016/j.jembe.2019.05.002

Thonig, Anne; Banta, Gary Thomas; Gibon, Stéphane; Kesäniemi, Jenni; Hansen, Winding Benni; Knott, Emily

A1 Journal article (refereed)

Acute impacts of the deer ked (Lipoptena cervi) infestation on reindeer (Rangifer tarandus tarandus) behaviour (2014)

Parasitology Research, 113 (4), 1489-1497, http://doi.org/10.1007/s00436-014-3790-3

Kynkäänniemi, Sanna-Mari; Kettu, Maria; Kortet, Raine; Härkönen, Laura; Kaitala, Arja; Paakkonen, Tommi; Mustonen, Anne-Mari; Nieminen, Petteri; Härkönen, Sauli; Ylönen, Hannu; et al.

B1 Non-refereed journal articles

Acute-phase-specific heptapeptide epitope for diagnosis of parvovirus B19 inection (1999)

J. Clin. Microbiol, 37 (12), 3952-3956,

Oker-Blom, Christian; Kaikkonen, L.; Harjunpää, I.; Lankinen, H.; Söderlund-Venermo, M.; Hokynar, K.; Hedman, L.; Hedman, K.

A1 Journal article (refereed)

Adaptation of a tropical butterfly to a temperate climate (2018)

Biological Journal of the Linnean Society, 123 (2), 279-289, http://doi.org/10.1093/biolinnean/blx145, OA

Nokelainen, Ossi; van Bergen, Erik; Ripley, Brad S.; Brakefield, Paul M.

A1 Journal article (refereed)

Adaptation of gene loci to heterochromatin in the course of Drosophila evolution is associated with insulator proteins (2020)

Scientific Reports, 10, 11893, http://doi.org/10.1038/s41598-020-68879-2, OA

Funikov, Sergei Yu.; Rezvykh, Alexander P.; Kulikova, Dina A.; Zelentsova, Elena S.; Protsenko, Lyudmila A.; Chuvakova, Lyubov N.; Tyukmaeva, Venera I.; Arkhipova, Irina R.; Evgen’ev, Michael B.

A1 Journal article (refereed)

Adaptation to a seasonally varying environment: a strong latitudinal cline in reproductive diapause combined with high gene flow in Drosophila montana (2011)

Ecology and Evolution, 1 (2), 160-168, http://doi.org/10.1002/ece3.14, OA

Tyukmaeva, Venera; Salminen, Tiina; Kankare, Maaria; Knott, Emily; Hoikkala, Anneli

A2 Review article, Literature review, Systematic review

Adaptation to environmental stress at different timescales (2020)

Annals of the New York Academy of Sciences, 1476 (1), 5-22, http://doi.org/10.1111/nyas.13974

Kristensen, Torsten Nygaard; Ketola, Tarmo; Kronholm, Ilkka

A1 Journal article (refereed)

Adaptation to fluctuations in temperature by nine species of bacteria (2018)

Ecology and Evolution, 8 (5), 2901-2910, http://doi.org/10.1002/ece3.3823, OA

Saarinen, Kati; Laakso, Jouni; Lindström, Leena; Ketola, Tarmo

G5 Doctoral dissertation (article)

Adaptation to seasonality: genetics and variation in life-history traits important in overwintering (2012)

Jyväskylä studies in biological and environmental science, 250,

Tyukmaeva, Venera