Publications (308)

A1 Journal article (refereed)

1H, 13C and 15N NMR chemical shift assignments of A. thaliana RCD1 RST (2017)

Biomolecular NMR Assignments, 11 (2), 207-210, http://doi.org/10.1007/s12104-017-9749-4

Tossavainen, Helena; Hellman, Maarit; Vainonen, Julia P.; Kangasjärvi, Jaakko; Permi, Perttu

A1 Journal article (refereed)

1H, 13C and 15N resonance assignments of the new lysostaphin family endopeptidase catalytic domain from Staphylococcus aureus (2017)

Biomolecular NMR Assignments, 11 (1), 69-73, http://doi.org/10.1007/s12104-016-9722-7

Raulinaitis, Vytas; Tossavainen, Helena; Aitio, Olli; Seppälä, Raili; Permi, Perttu

A1 Journal article (refereed)

A 2000-year record of lake ontogeny and climate variability from the north-eastern European Russian Arctic (2017)

Holocene, 27 (3), 339-348, http://doi.org/10.1177/0959683616660168

Luoto, Tomi; Kuhry, Peter; Holzkämper, Steffen; Solovieva, Nadia; Self, Angela E.

A1 Journal article (refereed)

A 5500-year oxygen isotope record of high arctic environmental change from southern Spitsbergen (2017)

Holocene, 27 (12), 1948-1962, http://doi.org/10.1177/0959683617715698

Arppe, Laura; Kurki, Eija; Wooller, Matthew J.; Luoto, Tomi; Zajączkowski, Marek; Ojala, Antti

A1 Journal article (refereed)

Abiotic and biotic controls on methane formation down to 2.5 km depth within the Precambrian Fennoscandian Shield (2017)

Geochimica et Cosmochimica Acta, 202 (0), 124-145, http://doi.org/10.1016/j.gca.2016.12.020, OA

Kietäväinen, Riikka; Ahonen, Lasse; Niinikoski, Paula; Nykänen, Hannu; Kukkonen, Ilmo T.

A1 Journal article (refereed)

Accurate Three States Model for Amino Acids with Two Chemically Coupled Titrating Sites in Explicit Solvent Atomistic Constant pH Simulations and pKa Calculations (2017)

Journal of Chemical Theory and Computation, 13 (1), 147-160, http://doi.org/10.1021/acs.jctc.6b00807

Dobrev, Plamen; Donnini, Serena; Groenhof, Gerrit; Grubmüller, Helmut

A3 Book section, Chapters in research books

Adaptive Evolution and Epigenetics (2017)

Handbook of Epigenetics : The New Molecular and Medical Genetics, 427-438, http://doi.org/10.1016/B978-0-12-805388-1.00028-6

Kronholm, Ilkka

A1 Journal article (refereed)

Age at maturation has sex- and temperature-specific effects on telomere length in a fish (2017)

Oecologia, 184 (4), 767-777, http://doi.org/10.1007/s00442-017-3913-5

Noreikiene, Kristina; Kuparinen, Anna; Merilä, Juha

A1 Journal article (refereed)

Alder pollen in Finland ripens after a short exposure to warm days in early spring, showing biennial variation in the onset of pollen ripening (2017)

Agricultural and Forest Meteorology, 247 (0), 408-413, http://doi.org/10.1016/j.agrformet.2017.08.030, OA

Linkosalo, Tapio; Le tortorec, Eric; Prank, Marje; Pessi, Anna-Mari; Saarto, Annika

A1 Journal article (refereed)

A mechanistic underpinning for sigmoid dose-dependent infection (2017)

Oikos, 126 (6), 910-916, http://doi.org/10.1111/oik.03242

Anttila, Jani; Mikonranta, Lauri; Ketola, Tarmo; Kaitala, Veijo; Laakso, Jouni; Ruokolainen, Lasse

A1 Journal article (refereed)

A new species of Arctoseius Thor, 1930 (Acari: Ascidae) from taiga regions of the Palaearctic, with a key to Arctoseius species of Fennoscandia, NW Europe (2017)

ZooTaxa, 4268 (4), 554-562, http://doi.org/10.11646/zootaxa.4268.4.6

Makarova, Olga L.; Huhta, Veikko

A1 Journal article (refereed)

A novel intrinsically disordered outer membrane lipoprotein of Aggregatibacter actinomycetemcomitans binds various cytokines and plays a role in biofilm response to interleukin-1β and interleukin-8 (2017)

Virulence, 8 (2), 115-134, http://doi.org/10.1080/21505594.2016.1216294, OA

Ahlstrand, Tuuli; Tuominen, Heidi; Beklen, Arzu; Torittu, Annamari; Oscarsson, Jan; Sormunen, Raija; Pöllänen, Marja T.; Permi, Perttu; Ihalina, Riikka

A1 Journal article (refereed)

Antiviral Properties of Chemical Inhibitors of Cellular Anti-Apoptotic Bcl-2 Proteins (2017)

Viruses, 9 (10), 271, http://doi.org/10.3390/v9100271, OA

Bulanova, Daria; Ianevski, Aleksandr; Bugai, Andrii; Akimov, Yevhen; Kuivanen, Suvi; Paavilainen, Henrik; Kakkola, Laura; Nandania, Jatin; Turunen, Laura; Ohman, Tiina; et al.

A3 Book section, Chapters in research books

Aposematism (2017)

Encyclopedia of Evolutionary Psychological Science, http://doi.org/10.1007/978-3-319-16999-6_2669-1

Rojas Zuluaga, Bibiana; Nokelainen, Ossi; Valkonen, Janne

A1 Journal article (refereed)

Aposematism in the burying beetle? Dual function of anal fluid in parental care and chemical defense (2017)

Behavioral Ecology, 28 (6), 1414-1422, http://doi.org/10.1093/beheco/arx100

Lindstedt, Carita; Boncoraglio, Giuseppe; Cotter, Sheena; Gilbert, James; Kilner, Rebecca M

A1 Journal article (refereed)

Application of high resolution melting assay (HRM) to study temperature-dependent intraspecific competition in a pathogenic bacterium (2017)

Scientific Reports, 7 (0), 980, http://doi.org/10.1038/s41598-017-01074-y, OA

Ashrafi, Roghaieh; Bruneaux, Matthieu; Sundberg, Lotta-Riina; Pulkkinen, Katja; Ketola, Tarmo

A3 Book section, Chapters in research books

Are Soils Taken into Consideration by the IPBES Assessment on Land Degradation and Restoration? (2017)

International Yearbook of Soil Law and Policy 2016, 165-177, http://doi.org/10.1007/978-3-319-42508-5_13

Desrousseaux, Maylis; Kotiaho, Janne Sakari; Kohler, Florent

A1 Journal article (refereed)

Assessing ecotoxicity of biomining effluents in stream ecosystems by in situ invertebrate bioassays : A case study in Talvivaara, Finland (2017)

Environmental Toxicology and Chemistry, 36 (1), 147-155, http://doi.org/10.1002/etc.3511, OA

Salmelin, Johanna; Leppänen, Matti T.; Karjalainen, Anna; Vuori, Kari-Matti; Gerhardt, Almut; Hämäläinen, Heikki

A1 Journal article (refereed)

Assessing the influence of confounding biological factors when estimating bioaccumulation of PCBs with passive samplers in aquatic ecosystems (2017)

Science of The Total Environment, 601-602 (0), 340-345, http://doi.org/10.1016/j.scitotenv.2017.05.140

Figueiredo, Kaisa; Mäenpää, Kimmo; Lyytikäinen, Merja; Taskinen, Jouni; Leppänen, Matti T.

A1 Journal article (refereed)

Assortment, but not knowledge of assortment, affects cooperation and individual success in human groups (2017)

PLoS ONE, 12 (10), e0185859, http://doi.org/10.1371/journal.pone.0185859, OA

Junikka, Jaakko; Molleman, Lucas; van den Berg, Pieter; Weissing, Franz J.; Puurtinen, Mikael

A1 Journal article (refereed)

Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) differ in their suitability as hosts for the endangered freshwater pearl mussel (Margaritifera margaritifera) in northern Fennoscandian rivers (2017)

Freshwater Biology, 62 (8), 1346-1358, http://doi.org/10.1111/fwb.12947, OA

Salonen, Jouni; Luhta, Pirkko-Liisa; Moilanen, Eero; Oulasvirta, Panu; Turunen, Jarno; Taskinen, Jouni

A1 Journal article (refereed)

Balancing selection maintains polymorphisms at neurogenetic loci in field experiments (2017)

Proceedings of the National Academy of Sciences of the United States of America, 114 (14), 3690-3695, http://doi.org/10.1073/pnas.1621228114, OA

Lonn, Eija; Koskela, Esa; Mappes, Tapio; Mökkönen, Mikael; Sims, Angela; Watts, Phillip

A2 Review article, Literature review, Systematic review

Behavioural, ecological, and evolutionary aspects of diversity in frog colour patterns (2017)

Biological Reviews, 92 (2), 1059-1080, http://doi.org/10.1111/brv.12269, OA

Rojas Zuluaga, Bibiana

G5 Doctoral dissertation (article)

Behaviour of sediment-associated silver nanoparticles and their toxicity to Lumbriculus variegatus (2017)

Jyväskylä studies in biological and environmental science, 331, OA

Rajala, Juho

B1 Non-refereed journal articles

Biologian kenttäopetus yliopistoissa : yhteistyöllä uuteen nousuun (2017)

Yliopistopedagogiikka, 24 (2), 52-54, OA

Komonen, Atte; Nyman, Tommi; Tahvanainen, Teemu; Hirvonen, Heikki; Eeva, Tapio; Huttunen, Sanna; Hänninen, Jari; Koivula, Matti; Koskela, Esa; Markkola, Annamari; et al.

B1 Non-refereed journal articles

Bridging Ecology and Evolution (2017)

Trends in Ecology and Evolution, 32 (6), 396-397, http://doi.org/10.1016/j.tree.2017.01.005

Kuparinen, Anna

A3 Book section, Chapters in research books

Camouflage (2017)

Encyclopedia of Evolutionary Psychological Science, 1-6, http://doi.org/10.1007/978-3-319-16999-6_2665-1

Nokelainen, Ossi; Rojas Zuluaga, Bibiana; Valkonen, Janne

A1 Journal article (refereed)

Can green infrastructure help to conserve biodiversity? (2017)

Environment and Planning C: Government and Policy, 35 (2), 265-288, http://doi.org/10.1177/0263774X16649363

Salomaa, Anna; Paloniemi, Riikka; Kotiaho, Janne Sakari; Kettunen, Marianne; Apostolopoulou, Evangelia; Cent, Joanna

A1 Journal article (refereed)

Cannibalism facilitates gigantism in a nine-spined stickleback (Pungitius pungitius) population (2017)

Ecology of Freshwater Fish, 26 (4), 686-694, http://doi.org/10.1111/eff.12316

Merilä, Juha; Eloranta, Antti

A1 Journal article (refereed)

Can video playback provide social information for foraging blue tits? (2017)

PeerJ, 5 (0), e3062, http://doi.org/10.7717/peerj.3062, OA

Hämäläinen, Liisa; Rowland, Hannah M.; Mappes, Johanna; Thorogood, Rose

A1 Journal article (refereed)

Caste-specific expression of constitutive and Beauveria bassiana induced immunity in the ant Formica exsecta (Hymenoptera: Formicidae) (2017)

Myrmecological news, 25 (0), 83-93,

Stucki, Dimitri; Sundström, Liselotte; Freitak, Dalial

D2 Article in a professional book

Cell counting with gradient boosted convolutional neural networks (2017)

Koneoppimispohjaiset tekoälyratkaisut hyvinvointi- ja terveyssovelluksissa, Informaatioteknologian tiedekunnan julkaisuja / Jyväskylän yliopisto, 2017, 42, 40-47,

Ojala, Timo; Wirta, Erkki-Ville; Äyrämö, Sami; Kuopio, Teijo; Pölönen, Ilkka

A1 Journal article (refereed)

Chaenothecopsis schefflerae (Ascomycota: Mycocaliciales): a widespread fungus on semi-hardened exudates of endemic New Zealand Araliaceae (2017)

New Zealand Journal of Botany, 55 (4), 387-406, http://doi.org/10.1080/0028825X.2017.1360368

Beimforde, Christina; Tuovila, Hanna; Schmidt, Alexander R.; Lee, William G.; Gube, Matthias; Rikkinen, Jouko

A1 Journal article (refereed)

Changes in pore water quality after peatland restoration : Assessment of a large-scale, replicated before-after-control-impact study in Finland (2017)

Water Resources Research, 53 (10), 8327-8343, http://doi.org/10.1002/2017WR020630, OA

Menberu, Meseret Walle; Marttila, Hannu; Tahvanainen, Teemu; Kotiaho, Janne Sakari; Hokkanen, Reijo; Kløve, Bjørn; Ronkanen, Anna-Kaisa

A1 Journal article (refereed)

Characterization of sulfhydryl oxidase from Aspergillus tubingensis (2017)

BMC Biochemistry, 18 (0), 15, http://doi.org/10.1186/s12858-017-0090-4, OA

Nivala, Outi; Faccio, Greta; Arvas, Mikko; Permi, Perttu; Buchert, Johanna; Kruus, Kristiina; Mattinen, Maija-Liisa

A1 Journal article (refereed)

Characterization of the Medieval Climate Anomaly, Little Ice Age and recent warming in northern Lapland (2017)

International Journal of Climatology, 37 (S1), 1257-1266, http://doi.org/10.1002/joc.5081

Luoto, Tomi; Kivilä, Henriikka; Rantala, Marttiina V.; Nevalainen, Liisa

A1 Journal article (refereed)

Chironomid paleo diet as an indicator of past carbon cycle in boreal lakes : Lake Kylmänlampi (Kainuu province; Eastern Finland) as a case study (2017)

Hydrobiologia, 785 (1), 149-158, http://doi.org/10.1007/s10750-016-2914-4

Belle, Simon; Luoto, Tomi; Kivilä, Henriikka; Nevalainen, Liisa

A1 Journal article (refereed)

Chironomus riparius exposure to fullerene-contaminated sediment results in oxidative stress and may impact life cycle parameters (2017)

Journal of Hazardous Materials, 322 (Part A), 301-309, http://doi.org/10.1016/j.jhazmat.2016.04.015

Waissi, G. C.; Bold, S.; Pakarinen, K.; Akkanen, J.; Leppänen, M. T.; Petersen, E. J.; Kukkonen, Jussi

A1 Journal article (refereed)

Chromatin organization regulates viral egress dynamics (2017)

Scientific Reports, 7 (0), 3692, http://doi.org/10.1038/s41598-017-03630-y, OA

Aho, Vesa; Myllys, Markko; Ruokolainen, Visa; Hakanen, Satu; Mäntylä, Elina; Virtanen, Jori; Hukkanen, Veijo; Kühn, Thomas; Timonen, Jussi; Mattila, Keijo; et al.

A1 Journal article (refereed)

Climate variability and lake ecosystem responses in western Scandinavia (Norway) during the last Millennium (2017)

Palaeogeography, Palaeoclimatology, Palaeoecology, 466 (0), 231-239, http://doi.org/10.1016/j.palaeo.2016.11.034, OA

Zawiska, Izabela; Luoto, Tomi; Nevalainen, Liisa; Tylmann, Wojciech; Jensen, Thomas C.; Obremska, Milena; Słowiński, Michał; Woszczyk, Michał; Schartau, Ann Kristin; Walseng, Bjørn

A1 Journal article (refereed)

Coinfection outcome in an opportunistic pathogen depends on the inter-strain interactions (2017)

BMC Evolutionary Biology, 17 (0), 77, http://doi.org/10.1186/s12862-017-0922-2, OA

Kinnula, Hanna; Mappes, Johanna; Sundberg, Lotta-Riina

A1 Journal article (refereed)

Colour and luminance contrasts predict the human detection of natural stimuli in complex visual environments (2017)

Biology Letters, 13 (9), 20170375, http://doi.org/10.1098/rsbl.2017.0375

White, Thomas E.; Rojas Zuluaga, Bibiana; Mappes, Johanna; Rautiala, Petri; Kemp, Darrell J.

B1 Non-refereed journal articles

Comment on “A simple way to incorporate uncertainty and risk into forest harvest scheduling” (2017)

Forest Ecology and Management, 386 (0), 86-91, http://doi.org/10.1016/j.foreco.2016.03.038, OA

Eyvindson, Kyle; Kangas, Annika

A1 Journal article (refereed)

Community structure affects trophic ontogeny in a predatory fish (2017)

Ecology and Evolution, 7 (1), 358–367, http://doi.org/10.1002/ece3.2600, OA

Sánchez-Hernández, Javier; Eloranta, Antti; Finstad, Anders G.; Amundsen, Per-Arne

A1 Journal article (refereed)

Comparison of quantitative Holocene temperature reconstructions using multiple proxies from a northern boreal lake (2017)

Holocene, 27 (11), 1745-1755, http://doi.org/10.1177/0959683617708442

Shala, Shyhrete; Helmens, Karin F.; Luoto, Tomi; Salonen, J. Sakari; Väliranta, Minna; Weckström, Jan

A1 Journal article (refereed)

Competition for resources is ameliorated by niche differentiation between Solidago virgaurea life-history stages in the Arctic (2017)

Journal of Plant Ecology, 10 (6), 907-917, http://doi.org/10.1093/jpe/rtw123, OA

Savolainen, Tiina; Kytöviita, Minna-Maarit

A1 Journal article (refereed)

Competitive interactions are mediated in a sex-specific manner by arbuscular mycorrhiza in Antennaria dioica (2017)

Plant Biology, 19 (2), 217-226, http://doi.org/10.1111/plb.12510, OA

Varga, Sandra; Vega-Frutis, Rocío; Kytöviita, Minna-Maarit

A1 Journal article (refereed)

Complete Genome Sequence of an Aquaculture-Associated Phage, FL-1, Infecting Flavobacterium spp. (2017)

Genome Anouncements, 5 (23), e00014-17, http://doi.org/10.1128/genomeA.00014-17, OA

Laanto, Elina; Ravantti, Janne J.; Sundberg, Lotta-Riina

A1 Journal article (refereed)

Conflicting objectives in production forests pose a challenge for forest management (2017)

Ecosystem Services, 28 (Part C), 298-310, http://doi.org/10.1016/j.ecoser.2017.06.018, OA

Pohjanmies, Tähti; Triviño, María; Le tortorec, Eric; Salminen, Hannu; Mönkkönen, Mikko

A1 Journal article (refereed)

Conjugative ESBL plasmids differ in their potential to rescue susceptible bacteria via horizontal gene transfer in lethal antibiotic concentrations (2017)

Journal of Antibiotics, 70 (0), 805-808, http://doi.org/10.1038/ja.2017.41

Mattila, Sari; Ruotsalainen, Pilvi; Ojala, Ville; Tuononen, Timo; Hiltunen, Teppo; Jalasvuori, Matti