Publications (305)

B1 Non-refereed journal articles

A Common Receptor Found for Echoviruses (2019)

Trends in Microbiology, 27 (6), 475-477, http://doi.org/10.1016/j.tim.2019.03.010

Laajala, Mira; Marjomäki, Varpu

A1 Journal article (refereed)

A comparative study of the effect of UV and formalin inactivation on the stability and immunogenicity of a Coxsackievirus B1 vaccine (2019)

Vaccine, 37 (40), 5962-5971, http://doi.org/10.1016/j.vaccine.2019.08.037, OA

Hankaniemi, Minna M.; Stone, Virginia M.; Sioofy-Khojine, Amir-Babak; Heinimäki, Suvi; Marjomäki, Varpu; Hyöty, Heikki; Blazevic, Vesna; Laitinen, Olli H.; Flodström-Tullberg, Malin; Hytönen, Vesa P.

A1 Journal article (refereed)

Acute and chronic response to a change in salinity of the euryhaline polychaete Pygospio elegans (Claparède) (2019)

Journal of Experimental Marine Biology and Ecology, 516 (0), 79-88, http://doi.org/10.1016/j.jembe.2019.05.002

Thonig, Anne; Banta, Gary Thomas; Gibon, Stéphane; Kesäniemi, Jenni; Hansen, Winding Benni; Knott, Emily

A1 Journal article (refereed)

A hidden species becoming visible : biogeography and ecology of Rhynchotalona latens (Cladocera, Anomopoda, Chydoridae) (2019)

Hydrobiologia, 837 (1), 47-59, http://doi.org/10.1007/s10750-019-3958-z, OA

Nevalainen, Liisa; Kivilä, Henriikka; Luoto, Tomi P.; Rantala, Marttiina V.; Damme, Kay Van

A1 Journal article (refereed)

Alarmist by bad design : Strongly popularized unsubstantiated claims undermine credibility of conservation science (2019)

Rethinking Ecology, 4 (0), 17-19, http://doi.org/10.3897/rethinkingecology.4.34440, OA

Komonen, Atte; Halme, Panu; Kotiaho, Janne Sakari

A1 Journal article (refereed)

A link between heritable parasite resistance and mate choice in dung beetles (2019)

Behavioral Ecology, 30 (5), 1382-1387, http://doi.org/10.1093/beheco/arz089, OA

Buzatto, Bruno A.; Kotiaho, Janne Sakari; Assis, Larissa A. F.; Simmons, Leigh W.

E1 Popularised article, newspaper article

Alkueliöt (2019)

Elämää maan kätköissä, 243-256,

Huhta, Veikko

E1 Popularised article, newspaper article

Alkutalven hittiötökät (2019)

Keskisuomalainen, 12.1.2019, 39,

Haimi, Jari

A1 Journal article (refereed)

Alternative biosynthetic starter units enhance the structural diversity of cyanobacterial lipopeptides (2019)

Applied and Environmental Microbiology, 85 (4), e02675-18, http://doi.org/10.1128/AEM.02675-18, OA

Mareš, Jan; Hájek, Jan; Urajová, Petra; Kust, Andreja; Jokela, Jouni; Saurav, Kumar; Galica, Tomáš; Čapková, Kateřina; Mattila, Antti; Haapaniemi, Esa; et al.

D4 Published development or research report or study

Aluesuunnittelua kalatalousalueilla : Päijänteen kalatalousalueet (2019)

Luonnonvara- ja biotalouden tutkimus, 73/2019, OA

Keskinen, Tapio; Lappalainen, Antti; Ojanen, Hannu; Paloheimo, Aurora; Ruuhijärvi, Jukka; Ruokonen, Timo

E1 Popularised article, newspaper article

Ampparit heräävät (2019)

Keskisuomalainen, 4.5.2019, 35,

Komonen, Atte

A1 Journal article (refereed)

An invasive species, Carassius gibelio, alters the native fish community through trophic niche competition (2019)

Aquatic Sciences, 81 (2), 29, http://doi.org/10.1007/s00027-019-0623-6, OA

Özdilek, Şükran Yalçın; Partal, Nurbanu; Jones, Roger

A1 Journal article (refereed)

Antibacterial efficiency of surface-immobilized Flavobacterium-infecting bacteriophage (2019)

ACS Applied Bio Materials, 2 (11), 4720-4727, http://doi.org/10.1021/acsabm.9b00242, OA

Leppänen, Miika; Maasilta, Ilari; Sundberg, Lotta-Riina

A2 Review article, Literature review, Systematic review

Antipredator strategies of pupae : how to avoid predation in an immobile life stage? (2019)

Philosophical Transactions of the Royal Society B : Biological Sciences, 374 (1783), 20190069, http://doi.org/10.1098/rstb.2019.0069, OA

Lindstedt, Carita; Murphy, Liam; Mappes, Johanna

A1 Journal article (refereed)

A practical approach to improve the statistical performance of surface water monitoring networks (2019)

Environmental Monitoring and Assessment, 191 (6), 318, http://doi.org/10.1007/s10661-019-7475-3, OA

Kotamäki, Niina; Järvinen, Marko; Kauppila, Pirkko; Korpinen, Samuli; Lensu, Anssi; Malve, Olli; Mitikka, Sari; Silander, Jari; Kettunen, Juhani

A1 Journal article (refereed)

A Practical Perspective : The Effect of Ligand Conformers on the Negative Image-Based Screening (2019)

International Journal of Molecular Sciences, 20 (11), 2779, http://doi.org/10.3390/ijms20112779, OA

Ahinko, Mira; Kurkinen, Sami; Niinivehmas, Sanna; Pentikäinen, Olli; Postila, Pekka

A2 Review article, Literature review, Systematic review

Aquaculture as a source of empirical evidence for coevolution between CRISPR-Cas and phage (2019)

Philosophical Transactions of the Royal Society B: Biological Sciences, 374 (1772), 20180100, http://doi.org/10.1098/rstb.2018.0100, OA

Hoikkala, Ville; De Freitas Almeida, Gabriel; Laanto, Elina; Sundberg, Lotta-Riina

A1 Journal article (refereed)

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors (2019)

eLife, 2019 (8), e43284, http://doi.org/10.7554/elife.43284, OA

Shapiguzov, Alexey; Vainonen, Julia P.; Hunter, Kerri; Tossavainen, Helena; Tiwari, Arjun; Järvi, Sari; Hellman, Maarit; Aarabi, Fayezeh; Alseekh, Saleh; Wybouw, Brecht; et al.

G5 Doctoral dissertation (article)

Assembly and Functioning of Endophytic Bacterial Communities in Arcto-Alpine Pioneer Plant Oxyria digyna (2019)

JYU Dissertations, 62, OA

Given, Cindy

G5 Doctoral dissertation (article)

Assessing ecological effects of peatland use with testate amoebae (2019)

JYU dissertations, 125, OA

Daza Secco, Emmanuela

A1 Journal article (refereed)

Assessment of Fish Embryo Survival and Growth by In Situ Incubation in Acidic Boreal Streams Undergoing Biomining Effluents (2019)

Archives of Environmental Contamination and Toxicology, 76 (1), 51-65, http://doi.org/10.1007/s00244-018-0558-2

Arola, Hanna; Karjalainen, Anna; Syrjänen, Jukka; Hannula, Maija; Väisänen, Ari; Karjalainen, Juha

A1 Journal article (refereed)

Association Mapping Based on a Common-Garden Migration Experiment Reveals Candidate Genes for Migration Tendency in Brown Trout (2019)

G3: Genes, Genomes, Genetics, 9 (8), 2887-2896, http://doi.org/10.1534/g3.119.400369, OA

Lemopoulos, Alexandre; Uusi-Heikkilä, Silva; Hyvärinen, Pekka; Alioravainen, Nico; Prokkola, Jenni M.; Elvidge, Chris K.; Vasemägi, Anti; Vainikka, Anssi

A1 Journal article (refereed)

Asymmetries in reproductive anatomy : insights from promiscuous songbirds (2019)

Biological Journal of the Linnean Society, 128 (3), 569-582, http://doi.org/10.1093/biolinnean/blz100, OA

Calhim, Sara; Pruett-Jones, Stephen; Webster, Michael S.; Rowe, Melissah

A1 Journal article (refereed)

Bacteriophage Adherence to Mucus Mediates Preventive Protection against Pathogenic Bacteria (2019)

mBio, 10 (6), e01984-19, http://doi.org/10.1128/mBio.01984-19, OA

Almeida, Gabriel M. F.; Laanto, Elina; Ashrafi, Roghaleh; Sundberg, Lotta-Riina

C1 Book

Bakteerien planeetta (2019)

Vuento, Matti

A1 Journal article (refereed)

Balancing food, activity and the dangers of sunlit nights (2019)

Behavioral Ecology and Sociobiology, 73 (7), 95, http://doi.org/10.1007/s00265-019-2703-y, OA

Bleicher, Sonny S.; Haapakoski, Marko; Morin, Dana J.; Käpylä, Teemu; Ylönen, Hannu

A1 Journal article (refereed)

Bioactive glass ions induce efficient osteogenic differentiation of human adipose stem cells encapsulated in gellan gum and collagen type I hydrogels (2019)

Materials Science and Engineering C, 99 (0), 905-918, http://doi.org/10.1016/j.msec.2019.02.035, OA

Vuornos, Kaisa; Ojansivu, Miina; Koivisto, Janne T.; Häkkänen, Heikki; Belay, Birhanu; Montonen, Toni; Huhtala, Heini; Kääriäinen, Minna; Hupa, Leena; Kellomäki, Minna; et al.

G5 Doctoral dissertation (article)

Biochemical and Structural Comparison of Spleen Tyrosine Kinase Interaction with Integrin and the Immunoreceptor Tyrosine-Based Activation Motif (2019)

JYU Dissertations, 63, OA

Antenucci, Lina

A1 Journal article (refereed)

Biogeochemical cycling and ecological thresholds in a High Arctic lake (Svalbard) (2019)

Aquatic Sciences, 81 (2), 34, http://doi.org/10.1007/s00027-019-0630-7, OA

Luoto, Tomi P.; Rantala, Marttiina V.; Kivilä, Henriikka; Nevalainen, Liisa; Ojala, Antti E. K.

A1 Journal article (refereed)

Biological control of potato soft rot caused by Dickeya solani and the survival of bacterial antagonists under cold storage conditions (2019)

Plant Pathology, 68 (2), 297-311, http://doi.org/10.1111/ppa.12956, OA

Hadizadeh, I.; Peivastegan, B.; Hannukkala, A.; van der Wolf, J. M.; Nissinen, Riitta; Pirhonen, M.

A1 Journal article (refereed)

Blocking Activin Receptor Ligands Is Not Sufficient to Rescue Cancer-Associated Gut Microbiota : A Role for Gut Microbial Flagellin in Colorectal Cancer and Cachexia? (2019)

Cancers, 11 (11), 1799, http://doi.org/10.3390/cancers11111799, OA

Pekkala, Satu; Keskitalo, Anniina; Kettunen, Emilia; Lensu, Sanna; Nykänen, Noora; Kuopio, Teijo; Ritvos, Olli; Hentilä, Jaakko; Nissinen, Tuuli A.; Hulmi, Juha J.

A1 Journal article (refereed)

Can Indirect Herbicide Exposure Modify the Response of the Colorado Potato Beetle to an Organophosphate Insecticide? (2019)

Journal of Economic Entomology, 112 (5), 2316-2323, http://doi.org/10.1093/jee/toz115

Margus, Aigi; Rainio, Miia; Lindström, Leena

B1 Non-refereed journal articles

Cannibalism (2019)

Current biology, 29 (24), R1295-R1297, http://doi.org/10.1016/j.cub.2019.09.068

Fouilloux, Chloe; Ringler, Eva; Rojas, Bibiana

A1 Journal article (refereed)

Catastrophic effects of sand mining on macroinvertebrates in a large shallow lake with implications for management (2019)

Science of the Total Environment, 695, 133706, http://doi.org/10.1016/j.scitotenv.2019.133706, OA

Zou, Wei; Tolonen, Kimmo; Zhu, Guangwei; Qin, Boqiang; Zhang, Yunling; Cao, Zhigang; Kai, Peng; Cai, Yongjiu; Gong, Zhijun

G5 Doctoral dissertation (article)

Cellular and viral factors promoting efficient enterovirus uncoating and replication (2019)

JYU dissertations, 146, OA

Laajala, Mira

A1 Journal article (refereed)

Cellulose nanofibrils prepared by gentle drying methods reveal the limits of helium ion microscopy imaging (2019)

RSC Advances, 9 (27), 15668-15677, http://doi.org/10.1039/C9RA01447K, OA

Ketola, Annika E.; Leppänen, Miika; Turpeinen, Tuomas; Papponen, Petri; Strand, Anders; Sundberg, Anna; Arstila, Kai; Retulainen, Elias

A1 Journal article (refereed)

Changing forest stakeholders’ perception of ecosystem services with linguistic nudging (2019)

Ecosystem Services, 40, 101028, http://doi.org/10.1016/j.ecoser.2019.101028, OA

Isoaho, K.; Burgas, D.; Janasik, N.; Mönkkönen, M.; Peura, M.; Hukkinen, J. I.

A1 Journal article (refereed)

Characterization of the interaction of the antifungal and cytotoxic cyclic glycolipopeptide hassallidin with sterol-containing lipid membranes (2019)

Biochimica et Biophysica Acta : Biomembranes, 1861 (8), 1510-1521, http://doi.org/10.1016/j.bbamem.2019.03.010, OA

Humisto, Anu; Jokela, Jouni; Teigen, Knut; Wahlsten, Matti; Permi, Perttu; Sivonen, Kaarina; Herfindal, Lars

E1 Popularised article, newspaper article

Citykimalaiset erilaistuvat (2019)

Keskisuomalainen, 30.11.2019, 27,

Komonen, Atte

A1 Journal article (refereed)

Combined prognostic value of CD274 (PD-L1)/PDCDI (PD-1) expression and immune cell infiltration in colorectal cancer as per mismatch repair status (2019)

Modern Pathology, 32 (6), 866-883, http://doi.org/10.1038/s41379-019-0219-7

Ahtiainen, Maarit; Wirta, Erkki-Ville; Kuopio, Teijo; Seppälä, Toni; Rantala, Juha; Mecklin, Jukka-Pekka; Böhm, Jan

A1 Journal article (refereed)

Comparing RADseq and microsatellites for estimating genetic diversity and relatedness : Implications for brown trout conservation (2019)

Nature Ecology and Evolution, 9 (4), 2106-2120, http://doi.org/10.1002/ece3.4905, OA

Lemopoulos, Alexandre; Prokkola, Jenni M.; Uusi-Heikkilä, Silva; Vasemägi, Anti; Huusko, Ari; Hyvärinen, Pekka; Koljonen, Marja-Liisa; Koskiniemi, Jarmo; Vainikka, Anssi

A1 Journal article (refereed)

Comparison of Diatoms and Dinoflagellates from Different Habitats as Sources of PUFAs (2019)

Marine Drugs, 17 (4), 233, http://doi.org/10.3390/md17040233, OA

Peltomaa, Elina; Hällfors, Heidi; Taipale, Sami

A2 Review article, Literature review, Systematic review

Competition between marine mammals and fisheries in contemporary harvested marine ecosystems (2019)

Marine Ecology Progress Series, 627, 207-232, http://doi.org/10.3354/meps13068, OA

Jusufovski, Dunja; Saavedra, Camilo; Kuparinen, Anna

A1 Journal article (refereed)

Complementary methods assessing short and long-term prey of a marine top predator : Application to the grey seal-fishery conflict in the Baltic Sea (2019)

PLoS ONE, 14 (1), e0208694, http://doi.org/10.1371/journal.pone.0208694, OA

Tverin, Malin; Esparza-Salas, Rodrigo; Strömberg, Annika; Tang, Patrik; Kokkonen, Iiris; Herrero, Annika; Kauhala, Kaarina; Karlsson, Olle; Tiilikainen, Raisa; Vetemaa, Markus; et al.

A1 Journal article (refereed)

Complete Genome Sequence of Fish Pathogen Flavobacterium columnare Strain B185, Originating from Finland (2019)

Microbiology Resource Announcements, 8 (49), e01285-19, http://doi.org/10.1128/MRA.01285-19, OA

Ravantti, Janne J. ; Laanto, Elina; Papponen, Petri; Sundberg, Lotta-Riina

A2 Review article, Literature review, Systematic review

Content, cost, and context : A framework for understanding human signaling systems (2019)

Evolutionary Anthropology, 28 (2), 86-99, http://doi.org/10.1002/evan.21768, OA

Barker, Jessica L.; Power, Eleanor A.; Heap, Stephen; Puurtinen, Mikael; Sosis, Richard

A1 Journal article (refereed)

Critical Structural Defects Explain Filamin A Mutations Causing Mitral Valve Dysplasia (2019)

Biophysical Journal, 117 (8), 1467-1475, http://doi.org/10.1016/j.bpj.2019.08.032, OA

Haataja, Tatu J.K.; Capoulade, Romain; Lecointe, Simon; Hellman, Maarit; Merot, Jean; Permi, Perttu; Pentikäinen, Ulla

A1 Journal article (refereed)

Cyclical and stochastic thermal variability affects survival and growth in brook trout (2019)

Journal of Thermal Biology, 84, 221-227, http://doi.org/10.1016/j.jtherbio.2019.07.012, OA

Pisano, Olivia M.; Kuparinen, Anna; Hutchings, Jeffrey A.

A4 Article in conference proceedings

Data-Driven Interactive Multiobjective Optimization Using a Cluster-Based Surrogate in a Discrete Decision Space (2019)

LOD 2018 : Machine Learning, Optimization, and Data Science. 4th International Conference, LOD 2018, Volterra, Italy, September 13-16, 2018, Revised Selected Papers, Lecture Notes in Computer Science, 11331, 104-115, http://doi.org/10.1007/978-3-030-13709-0_9, OA

Hakanen, Jussi; Malmberg, Jose; Ojalehto, Vesa; Eyvindson, Kyle

A1 Journal article (refereed)

Dead wood profile of a semi-natural boreal forest : implications for sampling (2019)

Silva Fennica, 53 (4), 10010, http://doi.org/10.14214/sf.10010, OA

Halme, P.; Purhonen, J.; Marjakangas, E.-L.; Komonen, A.; Juutilainen, K.; Abrego N.